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AquaDiva Presentations at Scientific Meetings


2020


Popp, J. 2020. Star Trek Tricorder - Still Science Fiction or Soon Reality!? Oral. Annual Meeting of the Federation of Analytical Chemistry and Spectroscopy Societies (SciX 2020), 10/12/2020 - 10/15/2020. Virtual.



2019


Algergawy, A.; König-Ries, B. 2019. Partitioning of BioPortal ontologies: An empirical study. Oral. 12th International conference on Semantic Web Applications and Tools in Healthcare and Life Sciences (SWAT4HCLS), 12/09/2019 - 12/12/2019. Edinburgh, Scotland.


Algergawy, A.; Faria, D.; Ferrara, A.; Fundulaki, I.; Harrow, I.; Hertling, S.; Jiménez-Ruiz, E.; Karam, N.; Khiat, A.; Lambrix, P.; Li, H.; Montanelli, S.; Paulheim, H.; Pesquita, C.; Saveta, T.; Shvaiko, P.; Splendiani, A.; Thiéblin, É.; Trojahn, C.; Vatascinová, J.; Zamazal, O.; Zhou, L. 2019. Results of the ontology alignment evaluation initiative 2019. Oral. 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 10/26/2019. Auckland, New Zealand.


Algergawy, A.; Kampe, B.; Hamed, H.; König-Ries, B.; Hahn, U. 2019. ADOnIS - An ontology-based information system providing seamless integration of structured and unstructured data. Poster. RDA 14th Plenary - Data Makes the Difference, 10/23/2019 - 10/25/2019. Helsinki, Finland.


Algergawy, A.; Kampe, B.; Hamed, H.; König-Ries, B.; Hahn, U. 2019. ADOnIS: Managing critical zone research data using semantic web technologies. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Azemtsop, G. 2019. Raman Microspectroscopy and Stable Isotope Probing for Single Cell Analysis. Poster. 118th General Assembly of the German Bunsen Society for Physical Chemistry (Bunsentagung), 05/30/2019-06/01/2019. Jena, Germany.


Azemtsop, G. 2019. Probing the metabolic activity state and the functions of single heterotrophic bacterial cells via Raman microspectroscopy and stable isotope labeling. Poster. 12th Workshop FT-IR Spectroscopy in Microbiological and Medical Diagnostics (by RKI), 10/10/19 - 10/11/2019. Berlin, Germany.


Benk, S.A.; Eveillard, D.; Taubert, M.; Küsel, K.; Gleixner, G. 2019. The coupled nature of DOM: Combining microbial and molecular perspectives on plant litter decomposition. Poster. American Geophysical Union Fall Meeting (AGU) 2019, 12/9/2019 - 12/13/2019. San Francisco, USA.


Bocklitz, T. 2019. Raman spectroscopic characterization of leukocyte in scenario of infection and inflammation. Oral. Annual Meeting of the Federation of Analytical Chemistry and Spectroscopy Societies (SciX 2019), 10/13/2019-10/18/2019. Palm Springs, USA.


Demir, G.; Metzger J.C.; Guswa, A.; Filipzik, J.; Hildebrandt, A. 2019. Spatial variation of soil properties and throughfall in European mixed beech forest. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 03/28/2019 - 03/29/2019. Vienna, Austria.


Demir G.; Metzger J.C.; Guswa, A.; Filipzik,J.; Hildebrandt, A. 2019. The effect of the spatial variation of soil properties and throughfall in plant available water. Poster. Leonardo Conference, 10/16/2019 - 10/18/2019. Esch-sur-Alzette, Luxembourg.


Ding, S.; Hinrichs, K.-U.; Gleixner, G. 2019. Characterization of intact polar lipids in soils for assessing their origin. Poster. American Geophysical Union Fall Meeting (AGU) 2019, 12/9/2019 - 12/13/2019. San Francisco, USA.


Eshvara Arachchige, D.; Aehnelt, M.; Totsche, K.U. 2019. Weathering and alteration of carbonate rock interfaces in the aeration zone of the Hainich critical zone exploratory, Germany. Poster. Goldschmidt annual international conference, 08/18/2019 - 08/23/2019. Barcelona, Spain.


Filipzik, J.; Michalzik, B.; Demir, G.; Peter, C.; Kunze, D.; Hildebrandt, A. 2019. Method for net precipitation measurements on grassland. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 03/28/2019 - 03/29/2019. Vienna, Austria.


Frosch, T. 2019. Advanced Raman spectroscopy - a powerful method in analytical chemistry. Oral. Chemistry Seminar, Curtin University, 02/15/2019. Perth, Australia.


Frosch, T. 2019. Fiber-enhanced Raman spectroscopy in pharmaceutical and environmental research. Oral. RACI Physical Chemistry Division Conference, 02/14/2019. Perth, Australia.


Frosch, T.; Sieburg, A.; Jochum, T.; Popp, J. 2019. Raman spectroscopic gas analysis of climate relevant environmental processes. Oral. Anakon, 03/25/2019. Münster, Germany.


Frosch, T.; Sieburg, A.; Jochum, T.; Popp, J. 2019. Raman spectroscopic analysis of microbial gas exchange processes. Oral. Bunsentagung, 05/30/2019. Jena, Germany.


Frosch, T.; Sieburg, A.; Knebl, A.; Frosch, T.; Popp, J. 2019. New developments in Raman gas sensing for energy and environmental research. Oral. SciX 2019, The Great Scientific Exchange, 10/17/2019. Palm Springs, USA.


Geesink, P.; Wegner, C.-E.; Probst, A.J.; Herrmann, M.; Dam, H.T.; Vollmers, J.; Kaster, A.-K.; Küsel, K. 2019. Genome-inferred spatio-temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in oligotrophic groundwater. Poster. Gordon Research Seminar - GRS Applied and Environmental Microbiology, 07/13 /2019 - 07/14/2019. South Hadley, USA.


Ghanem, N.; Stanley, C.E.; Chatzinotas, A.; Wick, L.Y. 2019. Mycosphere effects on phage transport and retention. Oral. 7th Swiss Microbial Ecology Meeng, 01/30/2019 - 02/01/2019. Lausanne, Switzerland.


Gleixner, G. 2019. Persistence of soil organic matter mirrored in dissolved molecules. Oral. American Geophysical Union Fall Meeting (AGU) 2019, 12/9/2019 - 12/13/2019. San Francisco, USA.


Gruselle, M.-C.; Tischer, A.; Potthast, K.; Michalzik, B. 2019. Carbon and nitrogen stoichiometry in tree-derived dissolved organic matter at the Hainich critical zone exploratory: First monitoring results. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Hamed, H.; Tskhvedadze, G.; Noack, A.; Blaa, D.; Löffler, F.; Algergawy, A.; König-Ries, B. 2019. OMICs data management in AquaDiva. Poster. iDiv Annual Conference, 08/29/2019 - 08/30/2019. Leipzig, Germany.


Herrmann, M.; Geesink, P.; Yan, L.; Lehmann, R.; Totsche, K.-U.; Küsel, K. 2019. Complex food webs in groundwater coincide with high genetic potential for chemolithoautotrophy. Oral. iDiv conference, 08/29/2019 - 08/30/2019. Leipzig, Germany.


Herrmann, M.; Geesink, P.; Yan, L.; Lehmann, R.; Totsche, K.-U.; Küsel, K. 2019. Complex food webs in groundwater coincide with high genetic potential for chemolithoautotrophy. Oral. Symposium on Aquatic Microbial Ecology (SAME), 08/31/2019 - 09/05/2019. Potsdam, Germany.


Herrmann, M.; Wegner, C.-E.; Krüger, M.; Kumar, S.; Thamdrup, B.; Totsche, K.U.; Küsel, K. 2019. Hotspots of anammox and nitrification in oligotrophic limestone aquifers. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Herrmann, M.; Wegner, C.-E.; Krüger, M.; Kumar, S.; Thamdrup, B.; Totsche, K.-U.; Küsel, K. 2019. Hotspots of anammox and nitrification in oligotrophic limestone aquifers. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Hildebrandt, A.; Bechmann, M.; Fischer, C.; Guderle, M.; Kleidon, A.; Metzger, J. 2019. Interactions between ecosystem structure and water fluxes. Talk. Tag der Hydrologie, 03/28/2019 - 03/29/2019. Karlsruhe, Germany.


Hildebrandt, A.; Bock, S.; Weckmüller, J.; Metzger, J.C.; Demir, G.; Rücker, A. 2019. Tracking spatial variation of water and matter fluxes from the top of the canopy to the bottom of the rooting zone. Oral. Leonardo conference, 10/16/2019 - 10/18/2019. Esch-sur-Alzette, Luxembourg.


Houhou, R. 2019. PCA-LDA in functional and discrete framework applied to Raman spectra. Poster. Scandinavian Symposium on Chemometrics (SSC16), 06/17/2019 -06/20/2019. Oslo, Norway.


Huang, J.; Schmidt, A.; Gleixner, G.; Rücker, A.; Hammerbacher, A.; Behrendt, T.; van Dam, N.M.; Gershenzon, J.; Trumbore, S.; Hartmann, H. 2019. Trade-offs between growth, constitutive and induced defense: beyond the carbon source-sink balance. Poster. European Geophysical Union, 04/07/2019 - 04/12/2019. Vienna, Austria.


Khurana, S.; Heße, F.; Thullner, M. 2019. Influence of spatio-temporal heterogeneities on microbial redox dynamics and nutrient cycling in the vadose zone. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Knebl, A.; Domes, R.; Yan, D.; Popp, J.; Trumbore, S.; Frosch, T. 2019. Fiber-enhanced Raman gas spectroscopy for isotopic labeling experiments with 18O and 13C. Poster. SciX 2019, The Great Scientific Exchange, 10/17/2019. Palm Springs, USA.


Knebl, A.; Trumbore, S.; Frosch T. 2019. Measuring biogenic gases with Raman spectroscopy. Oral. BioGeoColloquium at FSU Jena, 11/22/2019. Jena, Germany.


König-Ries, B. 2019. Semantics for FAIR research data management. Oral. 12th International conference on Semantic Web Applications and Tools in Healthcare and Life Sciences (SWAT4HCLS), 12/09/2019 - 12/12/2019. Edinburgh, Scotland.


Krüger, M.; Deckner, F.; Tischer, A.; Gruselle, M.-C.; Michalzik, B.; Küsel, K.; Herrmann, M. 2019. Seasonal effects on nitrate leaching, soil nitrification activity, and seepage-mediated vertical transfer of nitrifiers in a mixed beech forest. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Krüger, M.; Thamdrup, B.; Totsche, K.-U.; Küsel, K.; Herrmann, M. 2019. Spatial heterogeneity of nitrogen compounds in aquifers shapes nitrogen cycling in microbial communities but in turn is influenced by their activity. Poster. Symposium on Aquatic Microbial Ecology (SAME), 08/31/2019 - 09/05/2019. Potsdam, Germany.


Küsel, K.; Totsche, K.U.; Trumbore, S.E. 2019. Fuelling life of groundwater microbiomes in sloping carbonate-/siliciclastic bedrock strata. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Küsel, K.; Totsche, K.U.; Trumbore, S.E. 2019. Fuelling life of groundwater microbiomes in sloping carbonate-/siliciclastic bedrock strata. Poster. European Geophysical Union, 04/07/2019 - 04/12/2019. Vienna, Austria.


Lehmann, K.; Lehmann, R.; Totsche, K.U. 2019. Der Beitrag bodenbürtiger mobiler organischer Substanzen zum Stoffhaushalt unterirdischer Ökosysteme. Oral. Deutsche Bodenkundliche Gesellschaft (DBG), 08/26/2019 - 08/28/2019. Bern, Switzerland.


Lehmann, K.; Lehmann, R.; Totsche, K.U. 2019. Soil-born mobile organic matter (MOM) may significantly contribute to subsurface ecosystem development and functioning. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Lehmann, R.; Totsche, K.U. 2019. The impact of aeration zone flow dynamics for critical zone compartmentalization and functioning in hillslope terrain. Poster. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Marz, M. 2019. Deep RNAs of viruses. Oral. 5th Annual Danish Bioinformatics Conference, 08/23/2019. Odense, Denmark.


Marz, M. 2019. How huge machines detect tiny viruses. Oral. Lecture before the course "Theoretical and practical metagenomic approaches to viral discovery", 10/18/2019. Sao Paolo, Brasil.


Metzger, J.C.; Wutzler, T.; Filipzik, J.; Hildebrandt, A. 2019. From the canopy to the deeper subsurface: Tree-induced water flux bypasses. Oral. Leonardo Conference, 10/16/2019 - 10/18/2019. Esch-sur-Alzette, Luxembourg.


Michalzik, B.; Richter, T.; Tischer, A.; Küsel, K.; Geesink, P.; Herrmann M. 2019. Tree species metrics and canopy microbial communities affect aboveground hydrology and biogeochemistry. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Potthast, K.; Meyer, S.; Tischer, A.; Gleixner, G.; Crecelius, A.C.; Schubert, U.S.; Michalzik B. 2019. Grasshoppers induced acceleration of C and N cycling in N-limited pasture system. Oral. GfÖ (Gesellschaft für Ökologie) Annual Meeting, 09/09/2019 - 09/13/2019. Münster, Germany.


Rösch, P. 2019. Cultivation-free identification of pathogens via Raman microscopy. Oral. 118th General Assembly of the German Bunsen Society for Physical Chemistry (Bunsentagung), 05/30/2019 - 06/01/2019. Jena, Germany.


Rösch, P. 2019. The application of different Raman techniques on bacterial samples. Oral. 12th Workshop FT-IR Spectroscopy in Microbiological and Medical Diagnostics (by RKI), 10/10/19 - 10/11/2019. Berlin, Germany.


Sharafeldeen, D.; Algergawy, A.; König-Ries, B. 2019. Species association knowledge graph construction - A demo paper. Poster. 12th International conference on Semantic Web Applications and Tools in Healthcare and Life Sciences (SWAT4HCLS), 12/09/2019 - 12/12/2019. Edinburgh, Scotland.


Sharafeldeen, D.; Algergawy, A.; König-Ries, B. 2019. Towards knowledge graph construction using semantic data mining. Oral. 21st International Conference on Information Integration and Web-based Applications & Services (iiWAS2019), 12/02/2019 - 12/04/2019. Munich, Germany.


Simon, C.; Pimentel, T.P.; Monteiro, M.T.F.; Candido, L.A.; Petras, D.; Roth, V.-N.; Lange, M.; Dorrestein, P.; Forsberg, P.; Ferreira, S.; Gleixner, G. 2019. Identification of ecosystem-specific markers in dissolved organic matter by ultrahigh resolution tandem mass spectrometry. Poster. American Geophysical Union Fall Meeting (AGU) 2019, 12/9/2019 - 12/13/2019. San Francisco, USA.


Stolze, K.; Barnes, A. D.; Eisenhauer, N.; Totsche, K.U. 2019. Untersuchung der Anzahl an Bioporen in Abhängigkeit von Landnutzung und Bodeneigenschaften unter Verwendung von piecewise SEM. Oral. Deutsche Bodenkundliche Gesellschaft (DBG), 08/26/2019 - 08/28/2019. Bern, Switzerland.


Stolze, K.; Totsche, K.U. 2019. Depth-dependent, small-scale characteristics of earthworm burrow walls of L. terrestris influence water infiltration and transport processes. Oral. European Geoscience Union General Member Assembly 2019 (EGU2019), 04/07/2019 - 04/12/2019. Vienna, Austria.


Taubert, M.; Azemtsop, G.; Houhou, R.; Jehmlich, N.; von Bergen, M.; Rösch, P.; Popp, J.; Küsel, K. 2019. Chemolithoautotrophic primary production sustains microbial food webs in oxic groundwater. Poster. Applied & Environmental Gordon Research Conference, 07/13/2019 - 07/19/2019. South Hadley, MA, USA.


Totsche, K.U. 2019. Fluid flow and reactive transport in the subsurface part of the critical zone: Requirements for quantitative understanding of interplay and interdependencies of above- and belowground ecosystems. Oral. CRC Campos Workshop, 02/12/2019 - 02/13/2019. Tübingen, Germany.


Udovenko, V.; Algergawy, A. 2019. Entity extraction in the ecological domain - A practical guide. Talk. Datenbanksysteme für Business, Technologie und Web (BTW 2019), 18. Fachtagung des GI-Fachbereichs "Datenbanken und Informationssysteme" (DBIS), Workshopband, 03/04/2019 - 03/08/2019. Rostock, Germany.


Weinhold, A.; Garcia De Leo, G. A.; Ristok, C.; Potthast, K.; Tischer, A.; Michalzik, B.; van Dam, N. M. 2019. Digging into soil chemistry - Metabolomics analysis of root exudates and rhizosphere metabolites. Oral. Rhizosphere 5, 07/07/2019 - 07/11/2019. Saskatoon, Canada.


Yan, L.; Herrmann, M.; Kampe, B.; Lehmann, R.; Totsche, K.-U.; Küsel, K. 2019. Environmental selection: a look into the distribution and adaptation of microbes in dynamic groundwater ecosystems. Oral. iDiv conference, 08/29/2019 - 08/30/2019. Leipzig, Germany.


You, X.; Chatzinotas, A.; Harms H.; Wick, L.Y. 2019. Quantifying interactions of phages with non-host bacteria. Poster. 8th Congress of European Microbiologist, 07/07/2019 - 07/11/2019. Glasgow, UK.


You, X.; Chatzinotas, A.; Harms, H.; Wick, L.Y. 2019. Quantifying interactions of phages with non-host bacteria. Poster. Annual Conference 2019 of the Association for General and Applied Microbiology (VAAM), 03/17/2019 - 03/20/2019. Mainz, Germany.


You, X.; Chatzinotas, A.; Harms, H.; Wick, L.Y. 2019. Quantifying interactions of phages with non-host bacteria. N2 Event 2019: From research to application, 11/13/2019 - 11/15/2019. Berlin, Germany.



2018


Achich, N.; Algergawy, A.; Bouaziz, B.; König-Ries, B. 2018. BioOntoVis: An ontology visualization tool. Demo Paper. 21st International Conference on Knowledge Engineering and Knowledge Management (EKAW Posters & Demos), 11/12/2018 - 11/16/2018. Nancy, France.


Achich, N.; Bouaziz, B.; Algergawy, A.; König-Ries, B. 2018. BioOntoVis : Ontologies visualization tool for biodiversity. Demo. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Algergawy, A. 2018. Using semantic technologies to enhance data management in biodiversity. Oral. 2nd Symposium Developing a web portal for biodiversity research based on the hierarchy-of-hypotheses approach, 07/05/2018 - 07/06/2018. Hannover, Germany.


Algergawy, A.; Jonquet, C.; Karam, N.; Klan, F.; Minadakis, N.; Oggioni, A.; Rosati, I. 2018. Semantics for biodiversity and ecosystem research. Session. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Algergawy, A.; Klan, F.; Fäßler, E.; Hamed, H.; Kampe, B.; König-Ries B.; Hahn, U. 2018. ADOnIS: An ontology-based information system providing seamless integration of structured and unstructured data. Poster. 11th International Conference Semantic Web Applications and Tools for Healthcare and Life Sciences, 12/03/2018 - 12/06/2018. Antwerp, Belgium.


Algergawy, A.; König-Ries, B. 2019. The role of semantic web in biodiversity data management. Oral. CHIST-ERA Conference 2019: Novel Computational Approaches for Environmental Sustainability, 12/06/2019. Tallinn, Estonia.


Amara, J.; Bouaziz, B.; Algergawy A. 2018. Plant diseases prediction using deep learning. Poster. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Askar, M.; Algergawy, A.; Soliman, T.; König-Ries, B.; Sewisy, A. 2018. Query processing in ontology based data access. Oral. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Benk, S.A.; Li, Y.; Roth, V.-N.; Gleixner, G. 2018. Lignin dimers as potential markers for 14C-young terrestrial dissolved organic matter in the critical zone. Oral and Poster. 19th International Conference of the International Humic Substances Society, 09/16/2018 - 09/21/2018. Varna, Bulgaria.


Blohm, A.; Popp, J.; Frosch, T. 2018. Microbiological uptake of hydrogen and release of nitrogen - monitored by Raman gas spectroscopy. Poster. 26th International Conference on Raman Spectroscopy, 08/26/2018. Jeju, South Korea.


Frosch, T.; Yan, D.; Popp, J. 2018. Development of Raman sensors for life science applications. Oral. Achema, 06/11/2018. Frankfurt am Main, Germany.


Frosch, T.; Yan, D.; Sieburg, A.; Jochum, T.; Popp, J. 2018. New directions in fiber-enhanced Raman spectroscopy for biomedical and environmental applications. Oral. 26th International Conference on Raman Spectroscopy, 08/26/2018. Jeju, South Korea.


Geesink, P.; Wegner, C.-E.; Herrmann, M.; Dam, H.-T.; Vollmers, J.; Kaster, A.-K.; Küsel, K. 2018. Unravelling the life style and metabolic potential of Cand. Patescibacteria in oligotrophic aquifers. Poster. International Symposium on Microbial Ecology - ISME-17, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Gerlach, R.; Ostrowski, A.; Gaikwad, J.; Algergawy, A. 2018. Research data management in action - demonstrating the full range of features of the BEXIS 2 platform. Demo. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Gulderle , M.; Milcu, A.; Jesch, A.; Roscher, C.; Roy, J.; Buchmann, N.; Hildebrandt, A. 2018. Dynamic niche partitioning of water use in diverse ecosystems is affected by plant functional groups. Poster. European Geoscience Union General Member Assembly 2018 (EGU2018), 04/07/2018 - 04/12/2018. Vienna, Austria.


Herrmann, M.; Lehmann, K.; Totsche, K.U.; Deckner, F.F.K.; Michalzik, B.; Tischer, A.; Küsel, K. 2018. Travelling towards the subsurface - vertical mobility of soil microbes under different land use types. Poster. International Symposium on Microbial Ecology - ISME-17, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Herrmann, M.; Wegner, C.-E.; Kumar, S.; Geesink, P.; Thamdrup, B.; Totsche, K.U.; Küsel, K. 2018. Hotspots of anammox and nitrification in oligotrophic karstic limestone aquifers. Oral. Annual Meeting of the German Association for General and Applied Microbiology - VAAM, 04/16/2018 - 04/18/2018. Wolfsburg, Germany.


Hildebrandt, A.; Bechmann, M.; Guderle, M.; Kalbacher, T.; Kleidon, A.; Schneider, C. 2018. It is in the soil! Revealing the impediments to root water uptake in complex models using thermodynamics. Oral. Integrated Hydrosystem Modelling 2018 - How complex should integrated models be?, 04/03/2018 - 04/06/2018. Tübingen, Germany.


Hölzer, M. 2018. An Interface between bioinformatics and virology. Oral. 11th International Conference on Virology/Microbiology, 07/26/2018 - 07/27/2018. Vancouver, Canada.


Kallies, R.; Hölzer, M.; Anders, J.; Marz, M.; Chatzinotas A. 2018. The groundwater viral metagenome identified from the Hainich aquifer transect. Poster. ISME 17 - 17th International Symposium on Microbial Ecology, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Kallies, R.; Hölzer, M.; Brizola Toscan, R.; Nunes da Rocha, U.; Anders, J.; Marz, M.; Chatzinotas A. 2018. Preliminary results of the viral metagenome along an aquifer transect - comparison of three different viral DNA enrichment techniques. Oral. DOI VEGA Symposium, 03/12/2018 - 03/16/2018. San Francisco, USA.


Kallies, R.; Hölzer, M.; Brizola Toscan, R.; Nunes da Rocha, U.; Anders, J.; Marz, M.; Chatzinotas A. 2018. Preliminary results of the viral metagenome along an aquifer transect - comparison of three different viral DNA enrichment techniques. Poster. DOI VEGA Symposium, 03/12/2018 - 03/16/2018. San Francisco, USA.


Knebl, A.; Jochum, T.; Popp, J.; Trumbore, S.; Frosch, T. 2018. Measuring biological nitrogen fixation with Raman gas spectroscopy. Poster. 26th International Conference on Raman Spectroscopy, 08/26/2018. Jeju, South Korea.


Knebl, A.; Trumbore, S.; Frosch, T. 2018. Raman gas spectroscopy - a promising tool to study the nitrogen cycle. Oral. 23rd European Nitrogen Cycle Meeting, 09/21/2018. Alicante, Spain.


Kumar, S.; Herrmann, M.; Düver, A.; Hilke, I.; Frosch, T.; Trumbore, S.; Totsche, K.U.; Küsel, K. 2018. Glimpse into autotrophic denitrification by microbial consortia from pristine groundwater. Oral. MiCom - International Conference on Microbial Communication, 03/19/2018 - 03/22/2018. Jena, Germany.


Lohmann, P.; Schäpe, S.S.;Haange, S.B.; Oliphant, K.; Jehmlich, N.; von Bergen, M. 2018. Challenges and perspectives of metaproteomics to increase taxonomic and functional information of complex microbiomes. Poster. 12th European Summer School Advanced Proteomics, 07/29/2018 - 08/04/2018. Brixen, Südtirol, Italien.


Lohmann, P.; Schäpe, S.S.; Haange, S.B.; Oliphant, K.; Jehmlich, N.; von Bergen, M. 2018. Challenges and perspectives of metaproteomics to increase taxonomic and functional information of complex microbiomes. Poster. 3rd International Metaproteome Symposium, 12/03/2018 - 12/05/2018. Leipzig, Germany.


Metzger, J.; Kleemann, M.; Weckmüller, J.; Hildebrandt, A. 2018. Systematic patterns of forest soil water retention depending on the tree distance in a European mixed beech forest. Poster. European Geoscience Union General Member Assembly 2018 (EGU2018), 04/07/2018 - 04/12/2018. Vienna, Austria.


Parmar, K.; Narr, A.; Wick, L.; Kallies, R.; Chatzinotas A. 2018. Elucidating the impact of land use types and surface events on terrestrial viral communities by a modified fingerprinting approach. Poster. ISME 17 - 17th International Symposium on Microbial Ecology, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Rösch, P. 2018. Raman microspectroscopy - a new tool for cultivation-free pathogen identification. Oral, tutorial. 28th Annual Meeting of the German Society for Cytometry, 09/19/2018 - 09/21/2018. Jena, Germany.


Sharafeldeen, D.; Algergawy, A.; König-Ries, B. 2018. A data mining approach for species co-occurrence prediction. Poster. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Simon, C.; Roth, V.-N.; Dittmar, T.; Gleixner, G. 2018. Identification of ecosystem-specific markers in dissolved organic matter by Orbitrap tandem mass spectrometry. Oral. European Geoscience Union General Member Assembly 2018 (EGU2018), 04/08/2018 - 04/13/2018. Vienna, Austria.


Soliman, T.; Algergawy, A.; König-Ries, B.; Askar, M.; Abdelreheim, M. 2018. A semantic big biodiversity data integration tool. Oral. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Stolze, K.; Eisenhauer, N.; Totsche, K.U. 2018. Linking the number of biopores to different soil parameters and land use types using piecewise SEM. Poster. European Geoscience Union General Member Assembly 2018 (EGU2018), 04/08/2018 - 04/13/2018. Vienna, Austria.


Trumbore, S. 2018. The growth of biogeosciences. Oral. European Geophysical Union, 04/08/2018 - 04/13/2018. Vienna, Austria.


Trumbore, S.; Sahegian, D. 2018. Trends and challenges in biogeosciences. Oral. American Geophysical Union Fall Meeting (AGU) 2018, 12/10/2018 - 12/14/2018. Washington DC, USA.


Trumbore, S.; Totsche, K. U.; Lehmann, R.; Fabisch, M.; Küsel, K. 2018. Understanding the links between surface and subsurface biogeosphere. Poster. International Symposium: Earth surface shaping by biotic processes, 02/21/2018 - 02/24/2018. Halle (Saale), Germany.


Voigt, E.; Rall, B.C. 2018. Water in the dark: Exploration of an aquifer food web. Poster. 17th International Symposium on Microbial Ecology, 08/12/2018 - 08/17/2019. Leipzig, Germany.


Yan, L.; Herrmann, M.; Lehmann, R.; Totsche, K.U.; Rosenbaum, B.; Rall, B.; Küsel, K. 2018. Environmental filtering shapes the formation of groundwater microbiomes. Poster. International Symposium on Microbial Ecology - ISME-17, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Yan, L.; Herrmann, M.; Lehmann, R.; Totsche, K.U.; Rosenbaum, B.; Rall, B.; Küsel, K. 2018. Environmental filtering shapes the formation of groundwater microbiomes. Oral. iDiv conference, 12/11/2018 - 12/12/2018. Leipzig, Germany.


Yan, L.; Herrmann, M.; Lehmann, R.; Totsche, K.U.; Kampe, B.; Rosenbaum, B.; Rall, B.; Küsel, K. 2018. Environmental filtering shapes the formation of groundwater microbiomes. Poster. 17th International Symposium on Microbial Ecology, 08/12/2018 - 08/17/2018. Leipzig, Germany.


Yan, L.; Herrmann, M.; Lehmann, R.; Totsche, K.U.; Rosenbaum, B.; Rall, B.C.; Küsel, K. 2018. Environmental filtering shapes the formation of groundwater microbiomes. Poster. 17th International Symposium on Microbial Ecology, 08/12/2018 - 08/17/2019. Leipzig, Germany.


Youssef, N.; Algergawy, A. 2018. Content-based image retrieval for biodiversity: A comparative study. Poster. 10th International Conference on Ecological Informatics, 09/24/2018 - 09/28/2018. Jena, Germany.


Youssef, N.; Algergawy, A.; Moawad, I.F.; EL-Horbaty, E.M. 2018. Combined features for content based image retrieval: A comparative study. Oral. International Conference on Advanced Intelligent Systems and Informatics, 09/01/2018 - /09/03/2018. Cairo, Egypt.



2017


Abdelreheim, M.; Klan, F.; Soliman, T. 2017. Towards personalized support for ontology selection. Oral. 29th GI-Workshop Grundlagen von Datenbanken, 05/30/2017 - 06/02/2017. Blankenburg/Harz, Germany.


Amara, J.; Bouaziz, B.; Algergawy, A. 2017. A Deep Learning-based Approach for Banana Leaf Diseases Classification. Oral. 17th Conference on Database Systems for Business, Technology, and Web (BTW) workshop, 03/06/2017 - 03/10/2017. Stuttgart, Germany.


Babalou, S.; Algergawy, A.; König-Ries, B. 2017. An Ontology-based scientific data integration workflow. Oral. 29th GI-Workshop Grundlagen von Datenbanken, 05/30/2017 - 06/02/2017. Blankenburg/Harz, Germany.


Babalou, S.; Algergawy, A.; König-Ries, B. 2017. A particle swarm-based approach for semantic similarity computation. Oral. OTM 2017 Conferences - Confederated International Conferences: CoopIS, C&TC, and ODBASE, 10/23/2017 - 10/27/2017. Rhodes, Greece.


Babalou, S.; Algergawy, A.; Lantow, B.; König-Ries, B. 2017. Why the mapping process in ontology integration deserves attention. Oral. 19th International Conference on Information Integration and Web-based Applications & Services, iiWAS, 12/04/2017 - 12/06/2017. Salzburg, Austria.


Behrendt, T.; Catao, E.; Bunk, R.; Yi ,Z.; Greule, M.; Keppler, F.; Kesselmeier, J.; Trumbore, S. 2017. Towards the understanding of biogeochemical processes involved in the release of carbonyl sulfide (COS) from soil. Poster. European Geoscience Union General Member Assembly 2017 (EGU2017), 04/24/2017 - 04/27/2017. Vienna, Austria.

Crecelius, A.C.;  Vitz, J.; Näthe, K.; Meyer, S.; Michalzik, B.; Schubert, U.S. 2017. Effect of ecosystem type and fire on chemistry of WEOM as measured by LDI-TOF-MS and NMR. Oral. 50. Jahrestagung der Deutschen Gesellschaft für Massenspektrometrie (DGMS 2017), 03/05/2017 - 03/08/2017. Kiel, Germany.


Dalla Valle, N.; Wutzler, T.; Meye, S.; Potthast, K.; Michalzik, B. 2017. Estimating soil hydraulic properties from soil moisture time series by inversion of a dual-permeability model. Poster. European Geoscience Union General Assembly 2017 (EGU 2017), 04/23/2017 - 04/28/2017.Vienna, Austria.


Ding S.; Kohlhepp B.; Trumbore S.; Küsel K.; Totsche K.U.; Pohnert G.; Gleixner G.; Schwab V.F. 2017. In-situ production of core and intact bacterial and archaeal tetraether lipids in the pristine groundwater. Poster. Goldschmidt 2017, 08/13/2017 - 08/18/2017. Paris, France.


Ding, S.; Lazar, C.S.; Kohlhepp, B.; Pohnert, G.; Gleixner, G.; Schwab, V. 2017. Indigenous production of core and intact bacteria and archaeal tetraether lipids in the pristine aquifers. Poster. Goldschmidt Conference 2017, 08/13/2017 - 08/18/2017. Paris, France.


Fäßler, E.; Hahn, U. 2017. SEMEDICO: A comprehensive semantic search engine for the life sciences. Poster. The 55th Annual Meeting of the Association for Computational Linguistics, 07/30/2017 - 08/04/2017. Vancouver, Canada.

Fäßler, E.; Klan, F.; Algergawy, A.; König-Ries, B.; Hahn, U. 2017. Selecting and customizing ontologies with JOYCE. Oral. Workshop Ontology & Semantic Web for Biodiversity & Ecosystem Research, 07/11/2017 - 07/14/2017. Lecce, Italy.


Frosch, T.; Jochum, T.; Popp, J. 2017. Monitoring life science processes by Raman gas spectroscopy. Oral. 116th Bunsentagung, 05/25/2017. Kaiserslautern, Germany.


Frosch, T.; Yan, D.; Popp, J. 2017. Fiber optical Raman sensing for process analytics and control. Oral. 4rd European Conference on Process Analytics and Control Technology, 05/11/2017. Potsdam, Germany.

Geesink, P.; Herrmann, M.; Potthast, K.; Richter, T.; Küsel, K.; Michalzik, B. iBeLeaf - Simulated aphid infestation induces changes in phyllosphere microbiome and biogeochemical cycles. Oral. iDiv Annual Conference 2017, 09/19/2017 - 09/20/2017. Leipzig, Germany.


Geesink, P.; Tyc, O.; Küsel, K.; Garbeva, P. 2017. Love and Hate in the Subsurface - Growth promotion and inhibition induced by groundwater bacteria. Oral. 7th International Conference on Microbial Communication for Young Scientists (MiCom 2017), 03/19/2017 - 03/22/2017. Jena, Germany.


Geesink, P.; Herrmann, M.; Wegner, C.-E.; Totsche, K.U.; Küsel, K. Being a dwarf versus being starved - ultrasmall bacteria in oligotrophic groundwater. Oral. 2017 Tenth International Symposium of Subsurface Microbiology (ISSM 2017), 11/03/2017 - 11/16/2017. Rororua, New Zealand.


Gleixner, G.; Roth, V.-N.; Malik, A.A.; Scheibe, A.; Simon, C.; Lange, M.; Hertkorn, N.; Dittmar, T. 2017. Structural and isotopic changes in dissolved organic matter perlocating through soil highlight microbial importance. Oral. The association for the sciences of limnology and oceanography 2017: mountains to ocean, 02/26/2017 - 03/03/2017. Honolulu, Hawaii, USA.

Herrmann, M.; Geesink, P.; Taubert, M.; Carstens, L.; Wegner, C.-E.; Lazar, C.S.; Totsche, K.-U.; Küsel, K. 2017. Be small and find a host - do oligotrophic subsurface environments support symbiotic and parasitic relationships among bacteria? Oral. MiCom - International Conference on Microbial Communication, 03/18/2017 - 03/21/2017. Jena, Germany.

Herrmann, M.; Kumar, S.; Geesink, P.; Thamdrup, B.; Schwab, V.F.; Lücker, S.; Totsche, K.-U.; Küsel, K. 2017. Hotspots of anammox and denitrification in oligotrophic limestone aquifers. Poster. ICoN-5 5th International Conference on Nitrification and related processes, 07/23/2017 - 07/27/2017. Vienna, Austria.

Herrmann, M.; Kumar, S.; Geesink, P.; Thamdrup, B.; Schwab, V.F.; Lücker, S.; Totsche, K.-U.; Küsel, K. 2017. Hotspots of anammox and denitrification in oligotrophic limestone aquifers. Oral. ISSM-2017 International Symposium on Subsurface Microbiology, 11/05/2017 - 11/09/2017. Rotorua, New Zealand.

Hildebrandt, A. 2017. Understanding patterns and heterogeneity in ecohydrology. Invited talk. Chinese Academy of Science. Beijing, People's Republic of China.


Hildebrandt, A.; Bechmann, M.; Kleidon, A.; Kalbacher, T. 2017. Assessing efficiency and impediments of root water uptake using thermodynamics. Invited talk. HydroEco 2017 - 6th International Multidisciplinary Conference on Hydrology and Ecology, 06/18/2017 - 06/23/2017. Birmingham, United Kingdom.


Hildebrandt, A.H.; Bechmann, M.; Kleidon, A.; Kalbacher, T. 2017. Where are the limits of water flow within the root system? Oral. Thermodynamics and Optimality in Earth Systems, 11/21/2017 - 11/22/2017. Jena, Germany.

Klan, F.; Algergawy, A. 2017. A Semantic Search Component for BExIS 2. Oral. BExIS 2 UserDevConf, 06/15/2017 - 06/16/2017. Jena, Germany.


Klan, F.; Fäßler, E.; Algergawy, A.; König-Ries, B.; Hahn, U. 2017. Integrated semantic search on structured and unstructured data in the ADOnIS system. Oral. 2nd International Workshop on Semantics for Biodiversity at ISWC 2017, 10/22/2017. Vienna, Austria.


Klan, F. 2017. Semantic data management in the AquaDiva project. Oral. LifeWatch/EUDAT Workshop Ontology & Semantic Web for Research, 07/11/2017 - 07/14/2017. Lecce, Italy.

Klan, F.; Fäßler, E.; Algergawy, A.; König-Ries, B.; Hahn, U. 2017. Semantic search in AquaDiva. Oral. Ontology & Semantic Web for Biodiversity & Ecosystem Research, 07/11/2017 - 07/14/2017. Lecce, Italy.


Kumar S.; Herrmann M.; Düver A.; Hilke I.; Frosch T.; Trumbore S.; Totsche K.U.; Küsel K. 2017. Thiosulfate- and hydrogen-driven autotrophic denitrification by a model consortium enriched from groundwater of an oligotrophic limestone aquifer. Poster. Fifth International Conference on Nitrification and Related Processes 2017 (ICoN5 2017), 07/23/2017-07/27/2017. Vienna, Austria.


Li Y.; Roth V.-N.; Hertkorn N.; Gleixner G. 2017. Profiling of groundwater dissolved organic matter by high resolution NMR spectroscopy. Oral. Goldschmidt 2017, 08/13/2017 - 08/18/2017. Paris, France.


Metzger, J.;Germer, S.; Hildebrandt, A. 2017. Factors impacting stemflow generation in a European beech forest: Individual tree versus neighborhood properties. Oral. European Geoscience Union General Assembly 2017 (EGU 2017), 04/23/2017 - 04/28/2017. Vienna, Austria.


Potthast, K.; Meyer, S.; Gleixner, G.; Crecelius, A.C.; Schubert, U.S.; Michalzik, B. 2017. Application of isotopic techniques to investigate the impact of insect herbivory on C and N cycling in a grassland system - a mesocosm study. Poster. European Geosciences Union General Assemly 2017 (EGU 2017), 04/23/2017 - 04/28/2017. Vienna, Austria.


Potthast, K.; Meyer, S.; Gleixner, G.; Crecelius, A.C.; Schubert, U.S.; Michalzik, B. 2017. Einfluss der Insektenherbivorie auf den Kreislauf fester und gelöster organischer Substanzen in einem Graslandökosystem - eine Mesokosmenstudie. Oral. Tagung der Deutschen Bodenkundlichen Gesellschaft 2017 (DBG 2017), 09/03/2017 - 09/07/2017. Göttingen, Germany.


Potthast, K.; Meyer, S.; Crecelius, A.C.; Schubert, U.S.; Tischer, A.; Michalzik, B. 2017. Temporal patterns of OM and nutrient fluxes with soil solution as affected by low-severity fire in beech forests and pastures. Poster. 125th Anniversary Congress of the International Union of Forest Research Organizations (IUFRO 2017), 09/18/2017 - 09/22/2017. Freiburg, Germany.


Samir, S.; Sarhan, A.; Algergawy, A. 2017. Context-based web service discovery framework with QoS considerations. Oral. IEEE Eleventh International Conference on Research Challenges in Information Science (RCIS_2017), 05/10/2017 - 05/12/2017.  Brighton, UK.


Simon, C.; Roth, V.N., Li, Y.; Dittmar, T.; Gleixner, G. 2017. Reading the molecular signature of ecosystems in DOM. Comparative analysis of ultrahigh resolution mass data (FTICRMS vs. Orbitrap). Poster. European Geosciences Union General Assembly 2017 (EGU 2017), 04/23/2017 - 04/28/2017. Vienna, Austria.


Stolze, K.; Cesarz, S.; Eisenhauer, N.; Totsche, K.U. 2017. Tiefendifferenzierte Untersuchung der mikrobiellen Gemeinschaft und Benetzungseigenschaften von Regenwurmröhrenwänden von Lumbricus terrestris. Oral. Jahrestagung der Deutschen Bodenkundlichen Gesellschaft (German Soil Science Society Annual Meeting), 09/02/2017 -09/07/2017. Göttingen, Germany.


Stolze, K.; Trumbore, S.E.; Eisenhauer, N.; Totsche, K.U. 2017. Role of biopores for fluid flow and matter transport from topsoil - Concepts. Poster. IMPRS Retreat, 02/14/2017 - 02/15/2017. Heldrungen, Germany.


Taubert, M.; Stöckel, S.; Geesink, P.; Friedrich, S.; Jehmlich, N.; von Bergen, M.; Rösch, P.; Popp, J.; Küsel, K. 2017. Tracking active microbes to understand their ecosystem function. Poster. Applied & Environmental Gordon Research Conference, 07/16/2017 - 07/21/2017. South Hadley, MA, USA.


Trumbore, S. 2017. How to get your paper published (or rejected). Oral. MICOM 2017, 3/20/2017 - 3/23/2017. Jena, Germany.

Trumbore, S.; Küsel K.; Totsche, K.U.; Schwab, V.; Herrmann, M.; Nowak, M.; Gleixner, G. 2017. AquaDiva: Understanding the link between the surface and subsurface biogeosphere. Oral. American Geophysical Union Fall Meeting (AGU) 2017, 12/11/2017 - 12/15/2017. New Orleans, LA, USA.


Trumbore, S.; Nowak, M.; Schwab, V.; Totsche, K.U.; Küsel K. 2017. Using C isotopes to scale from microbes to landscapes. Oral. MICOM 2017, 3/20/2017 - 3/23/2017. Jena, Germany.


Ueberschaar, N.; Lehmann, K.; Schmalwasser, A.; Meyer, S.; Michalzik, B.; Totsche, K.-U.; Pohnert, G. 2017. Evaluation and application of lysimeters for untargeted soil solution analytics and marker identification. Poster.  American Society for Mass Spectrometry Conference 2017 (ASMS 2017), 06/04/2017 - 06/08/2017. Indianapolis, USA.


Wick, L.Y. 2017. Life, love, and murder'- logistics of fungal bacterial interplays for soil ecosystem. Oral. Asilomar 29th Fungal Genetics Conference, 03/14/2017 - 03/17/2017. Pacific Grove, USA.


Wick, l.Y.; Ghanem, N.; Kiesel, B.; Kallies, R.; Harms, H.; Chatzinotas, A. 2017. Marine phages as tracers for colloidal subsurface transport. Oral. AquaConSoil2017, 06/26/2019 - 06/30/2019. Lyon, France.



2016


Algergawy A.; Babalou S.; Klan F.; König-Ries B. 2016. OAPT: A tool for ontology analysis and partitioning. Oral. EDBT: 19th International Conference on Extending Database Technology, 03/15/2016 - 03/18/2016. Bordeaux, France.


Algergawy A.; Babalou S.; Klan F.; König-Ries B. 2016. A new metric to evaluate ontology modularization. Oral. 2nd international Workshop on Summarizing and Presenting Enities and Ontologies Co-located with the 13th Extended Semantic Web Conference, 05/29/2016 - 06/02/2016. Heraklion, Greece.


Chatzinotas A.; Narr A.; Mahlandt E.; Kiesel B.; Kallies R.; Lange P.; Küsel K.; Wick L.Y.; Harms H. 2016. Poster. 16th International Symposium on Microbial Ecology - ISME 2016 Conference, 08/21/2016 - 08/26/2016. Montreal, Canada.


Crecelius A.C.; Michalzik B.; Potthast K.; Meyer S.; Schubert U.S. 2016. Tracing the fate and transport of secondary plant metabolites in a laboratory mesocosm experiment by employing MSI. Oral. OurCon IV, 10/17/2016 - 10/21/2016. Ustron, Poland.


Frosch T. 2016. Fiber and cavity enhanced Raman spectroscopy sensing of gases and pharmaceuticals. Invited talk. Analyrica Conference 2016, Bunsen-Kirchhoff-Preis für analytische Spektroskopie, 05/10/2016 - 05/12/2016. Munich, Germany.


Frosch T.; Jochum T.; Popp J. 2016. Raman spectroscopy gas sensing. Invited talk. Applied Industrial Optics conference, Optical Society of America (OSA), 16/7/2016. Heidelberg, Germany.


Frosch T.; Yan D.; Jochum T.; Popp J. 2016. Fiber and cavity based Raman sensing. Invited talk. SciX 2016 The Great Scientific Exchange, 09/16/2016. Minneapolis, MN USA.


Gaffron F. 2016. A user-centered upload workflow for the BEXIS2 platform. Oral. BEXIS 2 UserDevConf 2016, 06/09/2016 - 06/10/2016. Jena, Germany.


Ghanem N.; Chatzinotas A.; Harms H.; Wick L.Y. 2016. Marine phages as excellent tracers for reactive colloidal transport in porous media. Poster. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), 03/13/2016 - 02/16/2016. Jena, Germany.


Ghanem N.; Chatzinotas A.; Harms H.; Wick L.Y. 2016. Marine phages as excellent tracers for reactive colloidal transport in porous media. Oral. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Gleixner G.; Thoms R.; Hartmann H.; Muhr J.; Karlowsky S.; Brugnoli E.; Calfapietra C.; Gavrichkova O.; Gessler A.; Kayler Z.; Keitel C.; Köhler M. 2016. Tracing the flow of tree carbohydrates into the rhizospere. Oral. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Gleixner G.; Witt R.; Schouten S.; Mäusebacher R.; Xu B.; Yao T.; Günther F. 2016. Late quaternary asian monsoon dynamics recorded in Tibetan lake systems compound-specific isotopes of terrestrial and aquatic biomarkers. Invited talk. 6th Third Pole Environment (TPE) Workshop on Tibetan Plateau Research, 05/16/2016 - 05/18/2016. Columbis, Ohio, USA.


Gleixner G.; Roth V.N.; Ashish A.M.; Scheible A.; Simon C.; Lange M.; Dittmar T. 2016. Structural and isotopic changes in dissolved organic matter percolating through soil highlight microbial importance. Oral. 18th International Conference of International Humic Substance Society (IHSS 18), 09/11/2016 - 09/16/201. Kanazawa, Japan.


Hahn U.; Matthies F.; Fäßler E.; Hellrich J. 2016. UIMA-based JCoRe 2.0. goes GitHub and Maven Central: State-of-the-art software resource engineering and distribution of NLP pipelines. Poster. LREC 2016 - Proceedings of the 10th International Conference on Language Resources and Evaluation, 05/23/2016 - 05/28/2016. Portorol, Slovenia.


Heße F.; Zink M.; Attinger S. 2016. Spatially distributed characterization of soil dynamics using travel-time distributions. Poster. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Herrmann M. 2016. Functional microbial diversity linked to autotrophy ad N-cycling in the Hainich aquifers. Oral. Bio-Geo-Colloqium, 05/24/2016. Jena, Germany.


Herrmann, M.; Geesink, P.; Taubert, M.; Carstens, L.; Hess, C.; Lazar, C.S.; Totsche, K.-U.; Küsel, K. 2016. Be small and find a host - do oligotrophic subsurface environments support symbiotic and parasitic relationships among bacteria? Oral. iDiv conference, 11/07/2016 - 11/08/2016. Leipzig, Germany.


Herrmann M.; Schwab V.F.; Nowak M.; Kumar S.; Lazar C.; Lange P.; Trumbore S.; Gleixner G.; Totsche K.U.; Küsel K. 2016. High spatial heterogenity of organic carbon input and autotrophic potential in pristine limestone aquifers. Poster. 16th International Symposium on Microbial Ecology - ISME 2016 Conference, 08/21/2016 - 08/26/2016. Montreal, Canada.


Hildebrandt A.; Bechmann, M.; Kleidon, A. 2016. Assessing biotic and abiotic impediments to root water uptake. Poster. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Jochum T.; Michalzik, B.; Bachmann A.; Popp J.; Frosch T. 2016. 13C-benzene & Raman gas spectroscopy to investigate respiration and biodegradation kinetics following soil contamination. Poster. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Klan F.; Algergawy A.; Fäßler E. 2016. A conceptual layer on top of BEXIS 2. Oral. BEXIS 2 UserDevConf 2016, 06/09/2016 - 06/10/2016. Jena, Germany.


Klan F.; Fäßler E.; Algergawy A.; König-Ries B.; Hahn U. 2016. Selecting and tailoring ontologies with JOYCE. Oral. 20th International Conference on Knowledge Engineering and Knowledge Management (EKAW), 11/19/2016 - 11/23/2016. Bologna, Italy.


Kohlhepp B.; Lehmann R.; Seeber P.; Totsche K.U. 2016. Struktur und Stockwerksbau der Grundwasserleiter am Nordrand des National Hainich. Poster. Hainichtagung 2016, 04/27/2016 - 04/29/2016. Bad Langensalza, Germany.


Kumar S.; Herrmann M.; Schwab-Lavric V.; Lange P.; Totsche K.U.; Thamdrup B.; Trumbore S.; Küsel K. 2016. Understanding nitrogen loss from pristine oligotrophic aquifers: Is it anammox or denitrification? Poster. IMPRS Retreat, 02/24/2016. Windischleuba, Germany.


Kumar S. 2016. Understanding nitrogen loss from pristine oligotrophic aquifers: Is it anammox or denitrification? Oral. IMPRS Retreat, 02/24/2016. Windischleuba, Germany.


Kumar S.; Herrmann M.; Lange P.; Totsche K.U.; Thamdrup B.; Trumbore S.; Küsel K. 2016. Diversity and distribution of anamox bacteria and denitrifiers in pristine limestone aquifers. Poster. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), 03/13/2016 - 02/16/2016. Jena, Germany.


Kumar S.; Herrmann M.; Schwab V.F.; Lange P.; Totsche K.U.; Thamdrup B.; Trumbore S.; Küsel K. 2016.Contribution of anammox versus denitrification to nitrate removal in pristine aquifers. Poster. 16th International Symposium on Microbial Ecology - ISME 2016 Conference, 08/21/2016 - 08/26/2016. Montreal, Canada.


Küsel K.; Totsche K.U.; Trumbore S.; AquaDiva-Team. 2016. SFB 1076 AquaDiva - Mit dem Wasser in den Hainich Untergrund. Oral. Hainichtagung 2016, 04/27/2016 - 04/29/2016. Bad Langensalza, Germany.


Küsel K. 2016. Subsurface Biodiversity Platform. Oral. iDiv Seminar Series SS 2016, 05/01/2016. Leipzig, Germany.


Küsel K. 2016. Reaching the groundwater: microbial transformation of nitrogen and carbon. Oral. Workshop 2016, 01/2016. Nijmegen, The Netherlands.


Küsel K. 2016. AquaDiva- First tries to link the surface with subsurface biogeosphere. Oral. Seminar Series 2016, 05/01/2016. Konstanz, Germany.


Küsel K. 2016. What is feeding microbial ife in the groundwater? Oral. Sino-German Symposium on Environmental Microbiology 2016, 10/2016. Bejing, P. R. China.


Küsel K. 2016. Going deep: What is fueling life in the groundwater? Oral. Seminar series 2016, Netherlands Institute of Ecology (NIOO), 11/2016. Wageningen, The Netherlands.


Lange P., Hermann M., Carstens L., Steinhäuser C., Gaspar M., Küsel K. (2016) Size matters. Impact of organic carbon availability on cell size of groundwater microbial communities. Poster. 16th International Symposium on Microbial Ecology (ISME 16), 08/21/2016-08/26/2016. Montreal, Canada.


Lazar C. 2016. Bacterial communities in pristine limestone aquifers rocks: Who is living there? Who is using CO2? Oral. Bio-Geo-Colloqium, 02/02/2016. Jena, Germany.


Lazar C.; Stoll W.; Herrmann M.; Lehmann R.; Totsche K.U.; Akob D.M.; Küsel K. 2016. Ammonia-oxidizing Thaumarchaeota and Woesearch dominate the archael community in pristine limestone aquifers. Poster. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), 03/13/2016 - 02/16/2016. Jena, Germany.


Lazar C; Stoll W.; Herrmann M.; Lehmann R.; Totsche K.U.; Akob D.M.; Küsel K. 2016. Ecophysiology of uncultured Archaea in groundwater and carbonate rocks. Oral. 16th International Symposium on Microbial Ecology - ISME 2016 Conference, 08/21/2016 - 08/26/2016. Montreal, Canada.


Lehmann, K.; Babin, D.; Smalla, K; Totsche, K.U. 2016. Release and transport of mobile organic matter and biocolloids: A combined physicochemical and microbiological study. Oral. European Geoscience Union General Member Assembly 2017 (EGU2017), 04/17/2016 - 04/22/2016. Vienna, Austria.

Lehmann R.; Seeber P.; Kohlhepp B.; Hermann M.; Küsel K.; Totsche K.U. 2016. Mobile Partikel im System Boden - Ungesättigte Zone-Aquifere: Quellen, Stoffspektrum und Bedeutung für Stoffkreisläufe und Funktionen unterirdischer Ökosysteme. Oral. 25. Meeting of the German Association for Hydrogeology 2016, 04/13/2016 - 04/17/2016. Karlsruhe, Germany.


Lehmann R.; Stoll W.; Lazar C.S.; Küsel K.; Totsche K.U. 2016. Mikrobielle Lebensgemeinschaften in Aquifer- und Aquitard-Gesteinen des Oberen Muschelkalks des Thüringen Beckens. Poster. Hainichtagung 2016. 04/27/2016 - 04/29/2016. Bad Langensalza, Germany. 


Lehmann R.; Totsche K.U.; Küsel K.; Trumbore S. 2016. Towards a fundamental UNderstanding of the Interplay and the Interdependence of Biogeochemistry and Biodiversity in the Subsurface of the Earths critical zone. Oral. 25. Meeting of the German Association for Hydrogeology 2016, 04/13/2016 - 04/17/2016. Karlsruhe, Germany.


Lehmann R., Tosche K.U., Trumbore S., Herrmann M., Steinhäuser C., Küsel K. (2016) Welche Wechselwirkungen bestehen zwischen Biodiversität und Ökologie unterirdischer Lebensräume, Landnutzung und lokaler Geologie? Interdisziplinäre Forschung in der durch Karbonatgestein geprägten Landschaft des Hainichs. Poster. Hainichtagung, 04/27/2016 - 04/29/2016. Bad Langensalza, Germany.


Lin, H.; Banwart, S.; Fu, B.; Derry, L.; Filley, T.; Guo, D.; Kumar, P.; Li, S.; Peng, X.; Richter, D.; Trumbore, S.; Vereecken, H.; Voelkel, J. 2016. Towards an international network of critical zone observatories (CZOs). Poster. 3rd International Conference on Hydropedology, 8/16/2016 - 8/29/2016. Beijing, China.


Löffler F.; Klan F. 2016. Does term expansion matter for the retrieval of biodiversity data? Poster. Posters and Demos Track of the 12th International Conference on Semantic Systems - SEMANTiCS2016, 09/12/2016 - 09/15/2016. Leipzig, Germany.


Metzger, J.; Dalla Valle, N.; Wutzler, T.; Filipzik, J.; Grauer, C.; Weckmüller, J.; Schelhorn, D.; Hildebrandt, A. 2016. Tracing spatial variation of canopy water fluxes to the soil: An experimental approach to assessing heterogeneity with high resolution data. Oral. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Metzger, J.; Dalla Valle, N.; Wutzler, T.; Filipzik, J.; Grauer, C.; Weckmüller, J.; Schelhorn, D.; Hildebrandt, A. 2016. Impact of net precipation patterns on soil moisture: An experiment approach with high resolution measurements. Oral. Forest soils: Conservation and Use, 10/10/2016 - 10/111/2016. Göttingen, Germany.


Narr A.; Mahlandt E.; Kiesel B.; Kallies R.; Wick L.Y.; Harms H.; Chatzinotas A. 2016. Temperent phages from terrestrial habitats: An introduction approach. Poster. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), 03/13/2016 - 02/16/2016. Jena, Germany.


Narr A.; Mahlandt E.; Kiesel B.; Kallies R.; Lange P.; Küsel K.; Wick L.Y.; Harms H.; Chatzinotas A. 2016. Temperent phages from terrestrial habitats: An induction approach. Poster. EMBO Conference: Virsus of Microbes 2016, 07/18/2016 - 07/22/2016. Liverpool, UK.


Nawaz A.; Wubet T.; Buscot F. 2016. Does distance from surface and local hydrochemistry affects the fungal community sturturresin subsurface limestone aquifers? Poster. 16th International Symposium on Microbial Ecology - ISME 2016 Conference, 08/21/2016 - 08/26/2016. Montreal, Canada.


Nowak M.; Schwab V.F.; Lazar C.; Behrendt T.;Küsel K.; Kohlhepp B.; Totsche K.U.; Trumbore S. 2016. 13C and 14C isotopes of dissolved inorganic carbon as a tool to evaluate biotic and abiotic controls on carbon cycling in two limestone aquifer assemblages. Oral. 2016 GSA Annual Meeting & Exposition, 08/25/2016 - 08/28/2016. Denver, Colorado, USA.


Potthast K.; Meyer S.; Crecelius A.C.; Schubert U.S.; Michalzik B. 2016. One year monitoring of fire-induced effects on DOM and nutrient dynamics under different land-use. Poster. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Roth V.N.; Lange M.; Dittmar T.; Gleixner G. 2016. Broadband molecular composition of dissolved organic mattering in grassland soil as a function of depth. Oral. European Geosciences Union General Assembly 2016 (EGU 2016), 04/17/2016 - 04/22/2016. Vienna, Austria.


Roth V.N.; Dittmar T.; Gaupp R.; Gleixner G. 2016. Ultrahochaufgelöste Massenspektrometrie zur Untersuchung der molekularen Zusammensetzung gelöster organischer Substanzen und deren Einflussfaktoren in Waldbodenwasser. Poster. LC-MS in der Umweltanalytik, 06/06/2016 - 06/07/2016. Leipzig, Germany.


Seeber P.; Lehmann R.; Kohlhepp B.; Totsche K.U. 2016. Grundwasserführung und Beschaffenheit der Grundwässer in Gesteinen des Oberen Muschelkalks am Nordrand des Nationalparks Hainich. Poster. Hainichtagung 2016. 04/27/2016 - 04/29/2016. Bad Langensaza, Germany. Post award winner.


Simon C.; Roth V.N.; Pohnert G.; Dittmar T.; Gleixner G. 2016. Vergleichende Analyse ultrahochaufgelöster massenspektrometrischer Daten (FT-ICR-MS/Orbitrap) von gelösten organischen Material. Poster. LC-MS in der Umweltanalytik, 06/06/2016 - 06/07/2016. Leipzig, Germany.


Simon C.; Koschinsky A.; Dittmar T. 2016. Riverine mixing at the molecular scale -  An ultrahigh resolution mass spectrometry study on the fate of Dissolved Organic Matter (DOM) and selected metals in the Amazon confluence zone (Manaus, Brazil). Oral. 18th International Conference of International Humic Substance Society (IHSS 18), 09/11/2016 - 09/16/201. Kanazawa, Japan. IHSS travel award.


Simon C.; Koschinsky A.; Dittmar T. 2016. Riverine mixing at the molecular scale -  An ultrahigh resolution mass spectrometry study on the fate of Dissolved Organic Matter (DOM) and selected metals in the Amazon confluence zone (Manaus, Brazil). Poster.18th International Conference of International Humic Substance Society (IHSS 18), 09/11/2016 - 09/16/201. Kanazawa, Japan. IHSS travel award.


Stoll, W; Lazar C.S.; Lehmann R.; Küsel K.; Totsche K.U. 2016. Mikrobielle Lebensgemeinschaften in Aquifer- und Aquitard-Gesteinen des Oberen Muschelkalks des Thüringen Beckens. Poster. Hainichtagung 2016. 04/27/2016 - 04/29/2016. Bad Langensaza, Germany. 


Stolze K.; Eisenhauer N.; Totsche K.U. 2016. Tiefenifferenzierte Untersuchung der mikrobiellen Gemeinschaft an Rohrwänden des Regenwurms Lumbricus terrestris auf einem Grasland-Standort. Poster. Hainichtagung 2016, 04/27/2016 - 04/29/2016. Bad Langensalza, Germany. Poster award winner.


Totsche K.U.; Küsel K.; Trumbore S.; the CRC AquaDiva Team. 2016. Towards a fundamental understanding of fluid flow, matter and information transport in the subsurface part of the Earths critical zone. Invited talk. Geologisches WS 2016/17 of the Karlsruhe Institute of Technology, 11/17/16. Karlsruhe, Germany.


Trumbore, S.; Nowak, M.; Behrendt, T.; Schwab, V.; Totsche, K.; Küsel, K. 2016. Aqua Diva - How water links surface and subsurface carbon cycling in a carbonate landscape. Oral. 3rd International Conference on Hydropedology, 8/16/2016 - 8/29/2016. Beijing, China.

Trumbore S.; Totsche K.U. 2016. AquaDiva - Critical Zone Research in a carbonate watershed in central Germany.Invited talk. International Workshop on Hydropedology, 08/16/2016. Beijing, P. R. China.


Wick, L.Y. 2016. Fungal bacterial interplays. Oral. 13th European Conference on Fungal Genetics (ECFG13), 04/03/2016 - 04/06/2016. Paris, France.



2015


Attinger S.; Herold C.; Rosse. 2015. Complexity of groundwater models in catchment scale hydrological models. Oral. European Geosciences Union General Assembly 2015 (EGU 2015), 04/12/2015 - 04/17/2015. Vienna, Austria.


Algergawy A.; Klan F. 2015. A sequence-based tree similarity search. Oral. 9th IEEE International Conference on Research Challenges in Information Science (RCIS), 05/13/2015 - 05/15/2015. Athens, Greece.


Bachmann, A.; Popp, J.; Frosch, T. 2015. Monitoring of biogenic gas dynamics using cavity-enhanced Raman spectroscopy. Oral. AquaDiva retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Bachmann, A.; Popp, J.; Frosch, T.; Jochum, T. 2015. Überwachung dynamischer Veränderungen in der Gaszusammensetzung bei biogenen Bodenprozessen durch resonatorverstärkte Raman-Spektroskopie. Poster. ANAKON 2015, 03/23/2015 - 03/26/2015. Graz, Austria.


Bachmann, A.; Popp, J.; Frosch, T. 2015. Cavity Enhanced Raman Spectrometry for the Investigation of Gas Fluxes in the Critical Zone. Oral. AquaDiva symposium 2015, 11/26/2015. Jena, Germany.


Bachmann, A.; Jochum, T.; Popp, J.; Frosch, T. 2015. Cavity-enhanced Raman spectrometry for the investigation of dynamical gas fluxes in environmental research. Poster. 18th Euro Analysis, the European Conference on Analytical Chemistry, 09/06/2015 - 09/20/2015. Bordeaux, France.


Baumeister, T.; Ueberschaar, N.; Straub, L.;  Pohnert, G. 2015. Assigning natural bacterial metabolites to their producers in groundwater. Poster. 2nd European Conference on Natural Products. Frankfurt/M, Germany.


Dalle Valle, N.; Meyer, S.; Wutzler, T.;Michalzik, B.;  Metzger, J.;  Hildebrandt, A. 2015. A simple model to predict water fluxes at hydrological hotspots. Poster. 5th International Symposium on Soil Organic Matter. Göttingen, Germany.


Frosch, T.; Bachmann, A.; Jochum, T.; Keiner, R.; Popp, J. 2015. Enhanced Raman spectroscopy - a novel technique for versatile environmental gas analysis. Oral. 15th EuCheMs International Conference on Chemistry and the Environment, 09/20/2015 - 09/24/2015. Leipzig, Germany.


Frosch, T.; Bachmann, A.; Jochum, T.; Hanf, S.; Keiner, R.; Popp, J. 2015. Highly sensitive Raman gas spectroscopy for bioanalytics and breath analysis. Invited talk.18th EuroAnalysis, the European Conference on Analytical Chemistry, 09/06/2015 - 09/10/2015. Bordeaux, France.


Gaspar M. 2015. Accessing key players, functional genes and pathways in aqueos habitats using metagenomics and - transcriptomics. Oral. 30th Winterseminar, 02/10/2015. Bled, Slovenia.


Gaspar M. 2015. Accessing key players, functional genes and pathways in aqueous habitats using metagenomics and -transcriptomics. Oral. AquaDiva Retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Ghanem N.; Chatzinotas A.; Harms H.; Wick L.Y. 2015. The transport of marine phages in soil as a tool of understanding the interaction of surface-subsurface events. Poster. 2nd conference on the Ecology of soil Microorganisms 2015, 11/29/2015 - 12/03/2915. Prague, Czech Republic


Ghanem N.; Chatzinotas A.; Harms H.; Wick L.Y. 2015. Marine phages as markers of reactive transport of colloidal particles in the critical zone. Poster. The 6th Congress of European Microbiologists (FEMS 2015), 06/07/2015-06/11/2015. Maastricht, The Netherlands.


Ghanem N.; Chatzinotas A.; Harms H.; Wick L.Y. 2015. Marine phages as markers of reactive transport of colloidal particles in the critical zone. Poster. 2nd international Hands-On Phage Biotechnology course, 06/15/2015 - 06/19/2015. Praga, Portugal.


Ghanem N.; P Chatzinotas A.; Harms H.; Wick L.Y. 2015. Evaluation of marine phages as markers of hydrological flow and reactive transport. Poster. Annual Conference 2015 of the Association for General and Applied Microbiology (VAAM), 03/01/2015 - 03/04/2015. Marburg, Germany.


Gleixner G. 2015. Identification of biogeochemical processes using multiconstrained isotope tracing. Invited talk. International SUBSOM symposium, 04/28/2015 - 05/01/2015. Raesfeld, Germany.


Herrmann M.; Lazar C.; Lange P.; Totsche K.U.; Küsel K. 2015. Bacterial diversity along the Hainich groundwater transect. Oral. AquaDiva Retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Herrmann M.; Lazar C.; Lange P.; Lehmann R.; Totsche K.U.; Küsel K. 2015. Microbial diversity and bacterial groups involved in CO2-fixation in pristine limestone aquifers. Poster. AquaDiva Symposium 2015. 11/26/2015. Jena, Germany.


Herrmann M.; Schwab V.F.; Lazar C.; Lange P.; Gleixner G.; Nowak M.; Trumbore S.; Lehmann R.; Totsche K.U.; Küsel K. 2015. Biodiversity and biogeochemical processes in the subsurface: How deep do the effects of above-ground biodiversity reach? Oral. iDiv Annual Conference 2015, 12/02/2015 - 12/03/2015. Leipzig, Germany.


Heße F.; Zink M.; Attinger S. 2015. Spatially distributed characterization of catchment dynamics using travel-time distributions. Poster. AGU Fall Meeting 2015, 12/14/2015 - 12/18/2015. San Francisco, CA USA.


Jochum, T.; Michalzik, B.; Frosch, T.; Bachmann, A.; Popp, J. 2015. Benzene biodegradation kinetics and soil microbial respiration characterized by Raman gas spectroscopy. Poster. 18th EuroAnalysis, the European Conference on Analytical Chemistry, 09/06/2015 - 09/10/2015. Bordeaux, France.


Jochum, T.; Michalzik, B.; Frosch, T.; Bachmann, A.; Popp, J. 2015. Monitoring soil microflora gas exchange with cavity enhanced Raman multi-gas spectroscopy. Poster. 9. Deutsches BioSensor Symposium, 03/11/2015 - 03/13/2015. Munich, Germany.


Jochum, T.; Popp, J.; Frosch, T. 2015. Monitoring of benzene biodegradation in a Hainich soil. Oral. AquaDiva retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Jochum, T.; Popp, J.; Frosch, T. 2015. Raman gas spectroscopy meets Environmental Science. Oral. Biogeo Colloquium. Jena, Germany.


Jochum, T.; Popp, J.; Frosch, T. 2015. Spectroscopy on biogenic gases. Oral. AquaDiva symposium 2015, 11/26/2015. Jena, Germany.


Klan F.; Fäßler E.; Algergawy A.; Hahn U.; König-Ries B. 2015. Selecting, tailoring and aligning formal ontologies for scientific knowledge management in AquaDiva. Oral. iDiv Annual Conference 2015, 12/02/2015 - 12/03/2015. Leipzig, Germany.


Kumar S.; Herrmann M.; Lange P.; Schwab-Lavric V.; Totsche K.U.; Trumbore S.; Küsel K. 2015. Abundance and community composition of microbial groups involved in denitrification and anammox in two superimposed limestone aquifers differing in oxygen availability. Poster. Annual Conference 2015 of the Association for General and Applied Microbiology (VAAM), 03/01/2015 - 03/04/2015. Marburg, Germany.


Kumar S.; Herrmann M.; Lange P.; Schwab-Lavric V.; Totsche K.U.; Trumbore S.; Küsel K. 2015. Abundance and community composition of microbial groups involved in denitrification and anammox along the Hainich groundwater transect. Poster. AquaDiva Retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Kumar S.; Herrmann M.; Lange P.; Schwab-Lavric V.; Totsche K.U.; Trumbore S.; Küsel K. 2015. Co-occurence or competition? Both anammox bacteria and denitrifiers appear to contribute to nitrate removal in limestone aquifers. Poster. 5th International Student Conference on Microbial Communication - MiCom 2015, 04/13/2015 - 04/16/2015. Jena, Germany.


Kumar S.; Herrmann M.; Lange P.; Totsche K.U.; Thamdrub B.; Trumbore S.; Küsel K. 2015. Diversity and Distribution of Anammox Bacteria and Denitrifiers in Pristine Limestone Aquifers. Poster. AquaDiva Symposium 2015. 11/26/2015. Jena, Germany.


König-Ries B.; Hahn U. 2015. Semantic technologies for consolidating structured data and unstructured documents in biodiversity research. Invited keynote. 9. Geoinformationssysteme 2015 - Beiträge zur 2. Münchner GI-Runde, 02/23/2015 - 02/24/2015. Munich, Germany.


Küsel K. 2015. Microbes in a highly dynamic terrestrial subsurface habitat. Oral. Deep Carbon Observatory International Science Meeting, 03/26/2015 - 03/28/2015. Munich, Germany.


Küsel K. 2015. AquaDiva - First tries to link the surface with the subsurface biogeosphere. Oral. Seminar Series WS 2015/16, University of Greifswald, 12/2015. Greifswald, Germany.


Lazar C. 2015. BIODIV3; Towards functional microbial subsurface biodiversity research. Oral. AquaDiva Retreat 2015, 06/22/2015 - 06/23/2015. Kammerforst, Germany.


Lazar C. 2015. Ammonia-oxidizing Thaumarchaeota and potentially fermenting Woesearcheota dominate the archael community diversity in pristine limestone aquifers. Oral. AquaDiva Symposium 2015. 11/26/2015. Jena, Germany.


Lazar C. 2015.Archael community diversity in pristine limestone aquifers. Poster. AquaDiva Symposium 2015. 11/26/2015. Jena, Germany.


Lin, H.; Banwart S.; Bojie, F.; Derry L., Filley, T; Guo, D.;Li, S.; Peng, X.; Richter, D.; Trumbore, S; Vereecken, H.; Voegel, J. 2015. Towards and International Network of Critical Zone Observatories (CZOs). Poster. AGU Fall Meeting, 12/14/2015 - 12/18/2015. San Francisco, CA, USA.


Metzger, J.; Dalla Valle, N.; Wutzler, T.; Filipzik, J.; Grauer, C.; Weckmüller, J.; Schelhorn, D.; Hildebrandt, A. 2015. Soil water flow heterogeneity introduced by forest canopies: Geostatistical evaluation of high resolution measurements in a temperate mixed beech stand. Poster. Jahrestagung der Deutschen Bodenkundlichen Gesellschaft (German Soil Science Society Annual Meeting). Munich, Germany.


Metzger, J.; Dalla Valle, N.; Wutzler, T.; Filipzik, J.; Grauer, C.; Weckmüller, J.; Schelhorn, D.; Hildebrandt, A. 2015. A simple model to predict water fluxes at hydrological hotspots. Poster. European Geoscience Union General Assembly. Vienna, Austria.


Narr, A.; Harms H.; Chatzinotas A. 2015.Virsus from soil: An evaluation of extraction methods using virus quantification and cultivation-independent fingerprint analysis. Poster. 2nd international Hands-On Phage Biotechnology course, 06/15/2015 - 06/19/2015. Praga, Portugal.


Narr, A.; Harms, H.; Chatzinotas A. 2015. Viruses from soil: An evaluation of extraction methods using virus quantification and cultivation-independent fingerprint analysis. Poster. Annual Conference 2015 of the Association for General and Applied Microbiology (VAAM), 03/01/2015 - 03/04/2015. Marburg, Germany.


Roth, VN.; Dittmar T.; Gaupp R.; Gleixner G. 2015. Molecular perspectives on organic matter across different ecosystems. Oral. 5th International Symposium on Soil Organic Matter. Göttingen, Germany.


Schwab, V. F.; Roth, V.-N.; Nowak, M,; Gleixner, G.; Küsel, K.; Totsche, K.U. 2015. PLFA spatiotemporal patterns for characterization of microbial communities in limestone aquifers. Poster. Goldschmidt 2015. Prague, Czech Republic.


Totsche K.U.; Trumbore S. 2015. Towards a fundamental understanding of fluid flow, matter and information transport in the subsurface part of the Earths critical zone. Invited talk. Towa Sino-German Symposium on "Coupled hydrological and nutrients transport across scales in Earth's Critical Zone: monitoring and modeling, 09/10/2015 - 09/14/2015. Nanjing, P.R. China.


Totsche K.U.; Lehmann R.; Küsel, K.; Trumbore S. 2015. Towards a fundamental Understanding of the Interplay and the Interdependence of Biogeochemistry and Biodiversity in the Subsurface of the Earths critical zone. Oral. Soil Science of America 2015 International Annual Meeting: "Synergy in Science: Partnering for Solutions, 11/15/2015 - 11/20/2015. Minneapolis, MS, USA.


Trumbore S.E.; Totsche, K.U.;  Küsel, K. 2015. Connecting surface and subsurface - the CRC AquaDiva. Invited talk. Sino-German Workshop "Coupled hydrological and nutrients transport across scales in the Earth's Critical Zone: monitoring and modeling, 09/10/2015 - 09/14/2015. Nanjing,PR China.


Trumbore S.E.; Totsche, K.U.; Küsel, K. 2015.  CRC AquaDiva - a new central German CZO. Invited talk. International Critical Zone Workshop, 04/13/2016 - 04/17/2016. San Francisco, CA, USA.


Trumbore S.E.; Totsche, K.U.; Lehmann R.;  Hermann, M.;  Steinhauser, C. 2015. How deep can surface signals be traced into the subsurface Critical Zone? Merging biodiversity and biogeochemistry research in a central German Muschelkalk landscape. Poster. AGU Fall Meeting 2015, 12/14/2015 - 12/18/2015. San Francisco, CA, USA. Abstract published as EP31A-986.


Ueberschaar N.; Roth, V.-N.; Schwab-Lavric, V.; Gleixner, G.; Pohnert,  G. 2015. The Earths Critical Zone: Understanding the Subsurface Hydro-Geo-Chemistry Using Metabolomic Profiling. Poster. Anakon 2015. Weimar, Germany.


Ueberschaar N.; Lazar, C.; Schwab, V.; Küsel, K.; Pohnert, G. 2015. Understanding Chemotrophy of Bacteria in the Earths Critical Zone with Metabolomic Tools and Stable Isotope Labelling. Poster. 2nd European Conference on Natural Products. Frankfurt/M, Germany.



2014


Algergawy, A.; Elshwimy F.A.; Sarhan A.; Sallam E.A. 2014. Aggregation of similarity measure in schema matching based on generalized mean. Oral. Data Engineering Workshops (ICDEW), 2014 IEEE 30th International Conference on Data Engineering, 03/31/2014 - 04/04/2014. Chicago, IL, USA.


Algergawy, A.; Klan F.; König-Ries, B. 2014. Partitoning-based ontology matching approaches: A comparative analysis. Poster and Oral. 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference. 10/19/2014 - 10/23/2014. Riva del Garda, Trentino, Italy.


Attinger S. 2014. Groundwater in times of droughts. Oral. 9European Geosciences Union General Assembly 2014 (EGU 2014), 04/27/2014 - 05/02/2014. Vienna, Austria.


Bachmann, A.; Jochum, T.; Popp, J.; Frosch, T. 2014. Monitoring of biogenic gas dynamics using cavity-enhanced Raman spectroscopic. Oral. AquaDiva PhD & Postdoc Workshop, 04/29/2014. Jena, Germany.


Bachmann, A.; Keiner, R.;  Popp, J.; Frosch, T. 2014. Raman multigas spectrometry as versatile technique to follow metabolic activities in environmental research. Poster. 24th international Conference on Raman Spectroscopy (ICORS 2014). Jena, Germany.


Bachmann, A.; Jochum T.; Frosch, T.; Popp, J. 2014. Raman spectroscopic multi-gas sensing: status and outlook. Oral. AquaDiva retreat 2014. Kammerforst, Germany.


Chovancová M.; Mayer S.; Michalzik B.; von Bergen M.; Jehmlich N. 2014. Elucidation of microbial nutrient cycling using key functional genes and proteins. Poster. DGHM-VAAM Meeting 2014, 10/05/2014 - 10/08/2014. Dresden, Germany.


Crecelius A.C.; Meyer, S.;  Michalzik, B.; Trede, D.; Alexandrov, T; Schubert, U.S. 2014. Implementation of mass spectrometric profiling and imaging in environmental science. Poster. OurCon II 2014 Imaging Mass Spectrometry Conference, 11/18/2014 - 11/21/2014. Antalya, Turkey.


Dalle Valle, N.; Wutzler T.; Hildebrandt, A. 2014. Predicting soil moisture time series data using a kinematic wave model. Poster. BIOGEOMON 2014, 8th International Symposium on Ecosystem Behavior (Biogeomon 2014, 07/13/2014 - 07/17/2014. Bayreuth, Germany.


Frosch, T.; Yan, D.; Keiner, R.; Hanf, S.; Brueckner, M.; Jochum, T.; Popp, J.  2014. Enhanced Raman spectroscopic (CERS and FERS). Invited talk. 24th international Conference on Raman Spectroscopy (ICORS 2014), 08/10/2014- 08/15/2014. Jena, Germany.


Ghanem N.; Narr, A.; Harms H.; Chatzinotas A.; Wick L. 2014. Phages as biological and colloidal vectors of mass and genetic information in the earth's critical zone (PHAGE). Poster. International Symposium of the German Priority Programme SPP 1315 Biogeochemical Interfaces in Soil on: Biogeochemical in Soil - Towards a Comprehensive and Mechanistic Understanding of Soil Functions, 10/06/2014 - 10/08/2014. Leipzig, Germany.


Gleixner, G.; Lange M.; Mellado P.; Sierra C.; Malik A.; Griffiths R.; Eisenhauer N. 2014. Biodiversity drives soil carbon storage through elevated microbial activity. Oral. The Sixth International Workshop on Soil and Sedimentary Organic Matter Stabilization and Destabilization (SOM6), 10/05/2014 - 10/09/2014. Kiawah Island, SC, USA.


Gleixner, G.; Roth VN.; Dittmar T.; Gaupp R. 2014. The molecular composition of dissolved organic matter in forest soils as a function of pH and temperature. Poster. 17th IHSS Meeting. Ioannina, Greece.


Gleixner, G. 2014. Microbial fingerprints in terrestrial carbon cycling. Invited talk. The 3rd International Conference of Geobiology (ICG 2014), 06/16/2014 - 06/18/2014. Wuhan, P. R. China.


Gleixner, G. 2014. Climate reconstruction using Hydrogen isotopes of biomarkers. Invited talk. Th5th Third Pole Environment (TPE), Workshop on Tibetan Plateau Research, 08/12/2014 - 09/12/2014. Berlin, Germany.


Herrmann A.; Ruszynak A.; Akob D.M.; Lazar C.; Opitz S.; Lange P.; Totsche K.U.; Küsel K. 2014. Large fractions of bacteria in pristine limestone aquifers are involved in CO2-fixation coupled to the oxidation of sulfur and nitrogen compounds. Poster. DGH-VAAM Meeting 2014, 10/05/2014 - 10/08/2014. Dresden, Germany.


Hildebrandt A.; Friesen, J.;  Koegler, S. 2014. Stemflow affects spatial soil moisture fields differently in summer and winter. Poster. European Geoscience Union General Assembly. Vienna, Austria.


Jochum, T.; Keiner, R.; Michalzik, B.; Popp, J.; Frosch, T. 2014. Analysis of the biogenic gas dynamics of peat bog ecosystems by CERS. Poster. 24th international Conference on Raman Spectroscopy (ICORS 2014), 08/10/2014-08/15/2014. Jena, Germany.


Jochum, T.; Bachmann, A.; Frosch, T.; Popp, J. 2014. Raman spectroscopic multi-gas sensing: status and outlook. Oral. AquaDiva retreat 2014, 06/02/2014-06/03/2014. Kammerforst, Germany.


Jochum, T.; Bachmann, A.; Popp, J.; Frosch, T. 2014. Monitoring of biogenic gas dynamics using cavity-enhanced Raman spectroscopic. Oral. AquaDiva symposium 2014. Jena, Germany.


Klan F.; Algergawy A.; Fäßler E. 2014. Knowledge Integration and Synthesis Using Semantic Technologies. Oral. GfÖ Annual Meeting 2014, 09/07/2014 - 09/11/2014. Hildesheim, Germany.


Kumar S.; Herrmann M.; Lange P.; Schwab-Lavric V.; Totsche K.-U.; Trumbore S.; Küsel K. 2014. Abundance and community composition of microbial groups involved in denitrification and anammox in two superimposed limestone aquifers differing in oxygen availability. VAAM conference. Dresden, Germany.


Küsel K. ALarge fractions of bacteria in pristine limestone aquifers are involved in CO2-fixation coupled to the oxidation of nitrogen and sulfur compounds. Oral. 9th International Symposium on Subsurface Microbiology: ISSM 2014, 10/05/2014 - 10/10/2014. Pacific Grove, California, USA.


Lazar C.; Herrmann M.; Opitz S.; Lange P.; Totsche K.U.; Küsel K. 2014. Ammonia-oxidizing Thaumarchaeota form a large fraction of the archaeal community in pristine limestone aquifers. Oral. 9th International Symposium on Subsurface Microbiology: ISSM 2014, 10/05/2014 - 10/10/2014. Pacific Grove, California, USA.


Lazar C. 2014. BIODIV3: Towards functional microbial subsurface biodiversity research. Oral. AquaDiva PhD & Postdoc Workshop. 09/24/2014. Jena, Germany.


Lazar C. 2014. BIODIV3: Towards functional microbial subsurface biodiversity research. Oral. AquaDiva Retreat 2014, 06/02/2014 - 06/03/2014. Kammerforst, Germany.


Lazar C. 2014. BIODIV3: Towards functional microbial subsurface biodiversity research. Oral. AquaDiva Symposium 2014, 12/04/2014- Jena, Germany.

Mai J.; Cuntz M.; Samaniego L. 2014. Parameter sensitivity estimation: The different information in deriative - and variance - based methods. Oral. European Geosciences Union General Assembly 2014 (EGU2014), 04/27/2014 - 05/02/2015. Vienna, Austria.


Metzger J.; Hildenbrandt A. 2014. Flow patterns of precipitation and soil water beneath vegetation canopies: Assesing water flow heterogeneity with heigh resolution measurements. Poster. PhD conference on Earth System Science. Jena, Germany.


Meyer S.; HCrecelius A.C.; Schubert U.S.; Michalzik B. 2014. Effects of ecosystem disturbances on organic matter cycling and its distribution: a mesocosm herbivory experiment. Poster. 8th International Symposium on Ecosystem Behaviour (Biogeomon 2014), 07/13/2014 - 07/17/2014. Bayreuth, Germany.


Narr A.; Ghanem N.; Wick L.; Harms H.; Chatzinotas A. 2014. Phages as vectors and indicators of biological information in the Earth's Critical Zone. Poster. EMBO Conference: Viruses of Microbes: Structure and function, from molecules to communities, 07/14/2014 - 07/18/2014. Zurich, Switzerland.


Nawaz A.; Wubet T.; Buscot F. 2014. Microbial inventory of Earth's Critical Zone. Poster. 9th ALTER-Net summer school, 11/2914. Peyresq, France.


Nowak M.; Von Fischer J.; Behrendt T.; Schwab V.; Trumbore S. 2014. Stable carbon and radiocarbon isotopes of DIC as a tool to asses biogeochemical cycles and carbon budgets in an calcareous aquifer. Oral. AquaDiva Retreat 2014, 06/02/2014-06/03/2014. Kammerforst, Germany.


Nowak, M.; Behrendt, T., Nowak, M., Trumbore, S. 2014. Online Determination of 18O Fractionation Between CO2 and Soil-Water during Soil Dessication by a Novel Mid-Infrared CO2 Isotope Analyzer Coupled to an Dynamic Chamber Incubation System. Poster. American Geophysical Union meeting. San Francisco, California.


Roth, VN.; Dittmar T.; Gaupp R.; Gleixner G. 2014. Ecosystem-specific molecules in disolved organic matter as fundament for new marker compounds. Oral. 17th IHSS Meeting. Ioannina, Greece.


Schwab, V.F.;Roth, V.-N.; Nowak, M,; Gleixner, G.; Küsel, K.; Totsche, K.-U. 2014. PLFA spatiotemporal patterns for characterization of microbial communities in limestone aquifers. Poster. Goldschmidt 2015. Prague, Czech Republic.


Ueberschaar N.; Roth, V.-N.; Schwab-Lavric, V.; Gleixner, G.; Pohnert,  G. 2014. The Earths Critical Zone: Understanding the Subsurface Hydro-Geo-Chemistry Using Metabolomic Profiling. Poster. ORCHEM 2014 - 19. Lecture Conference, 09/15/2014 - 09/17/2014. Weimar, Germany.


Ueberschaar N.; Roth V.-N.;  Schwab-Lavric V.; Gleixner G.; Pohnert G. 2014. The Earths Critical Zone: Understanding the Subsurface Hydro-Geo-Chemistry Using Metabolomic Profiling. Oral. Trends in Metabolomics - Analytics and Applications (DECHEMA meeting), 06/03/2014 - 06/05/2014. Frankfurt/M., Germany.


Totsche K.U.; Roth V.-N.; Trumbore S. 2014. The Collaborative Research Center 1076 Aqua Diva. Invited talk. GeoEnviron Seminar of the Zentrum für Angwandte Geowissenschaften (ZAG), Eberhard Karls University of Tübingen, 11/14/2014. Tübingen, Germany.

 


2013


Herrmann M.; Ruszynak A.; Opitz S.; Schulze I.; Akob D.; Totsche K.U. 2013. Elucidation of microbial communities involved in CO2 fixation in karstic limestone aquifers. Oral. Annual Conference 2013 of the Association for General and Applied Microbiology (VAAM), 03/10/2013 - 03/13/2013. Bremen, Germany.


Küsel, K.; Opitz S.; Herrmann M.; Rusnyak A.; Akob D.; Opitz S.; Totsche K.U.; Trumbore S. 2013. Depth-dependent links between surface and subsurface as reflected by microbial community structures in limestone aquifers. Oral. Goldschmidt Conference 2013, 08/25/2013. Florence, Italy.


Narr A.; Wick L.; Harms H.; Chatzinotas A. 2013. Phages as vectors and indicators of biological information in the Earth's Critical Zone. Poster. 2nd Thünen Symposium on Soil Metagenomics, 12/11/2013 - 12/13/2013. Braunschweig, Germany.